Difference between revisions of "Upgrades and Changes"

Revision as of 08:53, 30 March 2012

This page documents changes in the installed software on the biowikifarm (new software, new version, new configuration, etc.), including notes on known problems. Upgrades and Changes from 2010 and 2011 are no longer shown and available through the page history.

2012-01-04

SemanticMaps and Maps returned from 1.0.5 to 1.0.4, after Problem with displaying the regional maps in http://nnvm.eu/web was detected. Gregor Hagedorn 20:07, 4 January 2012 (CET)

2012-01-04

Installed git on species-id. Not entirely sure if that makes as widely available as needed on biowikifarm. --BobMorris 19:12, 11 January 2012 (CET)

2012-01-12

"2012-01-11: 1.18.1 released". Updating mediawiki minor version update to svn r108779, including some minor fixes from 1.18.0 to 1.18.). Wikis tested, seem to be ok. Updating Debian with apt-get. --Gregor Hagedorn 00:35, 13 January 2012 (CET)

2012-01-27

Changing collection extension from 1.18 (/usr/share/mediawiki/phase3/extensions/Collection pointing to ../../extensions/Collection) to 1.19 trunk svn (/usr/share/mediawiki/phase3/extensions/Collection pointing to ../../ext-trunk/Collection). Gregor Hagedorn 09:02, 27 January 2012 (CET)

2012-02-15

A full system update has been completed, new and faster hardware is now running Xen 6 virtualization host and the biowikifarm virtual machine is a Debian 6. Previously we had an old kernel specially compiled for Xen, which could no longer be upgrade, so that a complete reinstall was necessary. Some long-standing problems could be improved on the way, but it also took longer than expected. All Wikis, subversion repository, system tools, and Django apps are running again, job and backup completely newly set up, and many more. The Fedora/Tomcat system will follow soon. This is a big achievement of a team consisting of three organisations (JKI, BGBM, SNSB) as well as biowikifarm contributors. This was a true collaborative effort for which I want to thank all! Gregor Hagedorn 23:18, 15 February 2012 (CET)

2012-02-16

Problem: SMW formats values with type URL as http:////www... , i.e. with four slashes! Firefox/Chrome ignore this, but older browsers don't. Attemt to fix this with minor Mediawiki software updates: Old version: MediaWiki 1.18.1 (r108898), Semantic MediaWiki (Version 1.6.2) (r102570), Semantic Result Formats (Version 1.6.2) (r102570). New version: MediaWiki 1.18.1 (r111595), Semantic MediaWiki (Version 1.7.0.2) (r111595), Semantic Result Formats (Version 1.7) (r111595). The update required an update of the SMW tables. Gregor Hagedorn 00:14, 16 February 2012 (CET)

2012-02-16

SMW wikis presently still have https://bugzilla.wikimedia.org/show_bug.cgi?id=34044 to be fixed soon Gregor Hagedorn 09:47, 16 February 2012 (CET)

2012-02-19

Problems with SMW 1.7. In a few weeks 1.7.1 shall be released - temporarily returning to 1.6: cd /usr/share/mediawiki/ext-tagged-release; sudo svn switch http://svn.wikimedia.org/svnroot/mediawiki/tags/extensions/SemanticMediaWiki/REL_1_6_2 SemanticMediaWiki; sudo svn switch http://svn.wikimedia.org/svnroot/mediawiki/tags/extensions/SemanticResultFormats/REL_1_6_2 SemanticResultFormats

2012-02-21

Change of configuration: The namespace NS_INTERNAL has been secured so that only logged in users may see it. This may need testing (Create a page that starts with the Namespace prefix in your language; English: "Internal:"; German: ""Intern"). Gregor Hagedorn 00:59, 22 February 2012 (CET)

2012-03-01

Configuration change: ssh-login to the server (not the wikis etc.) is no longer possible with a password. Only login is the ssh public key that has been provided. Gregor Hagedorn 09:44, 2 March 2012 (CET)

2012-03-05

Upgrading to Semantic Mediawiki 1.7.1 (newly released). This should fix the bug that semantic URL properties are malformed and cannot be opened with older browsers (see above). Executed: cd /usr/share/mediawiki/ext-tagged-release; sudo svn switch http://svn.wikimedia.org/svnroot/mediawiki/tags/extensions/SemanticMediaWiki/REL_1_7_1 SemanticMediaWiki; sudo svn switch http://svn.wikimedia.org/svnroot/mediawiki/tags/extensions/SemanticResultFormats/REL_1_7 SemanticResultFormats --Gregor Hagedorn 20:39, 5 March 2012 (CET)

2012-03-15

Minor update of 1.18.1 to current (r113897) SVN rev. Adding http://www.mediawiki.org/wiki/Extension:JQueryMsg to enable http://www.mediawiki.org/wiki/Extension:UploadWizard. Both are used from trunk (ie. mediawiki version 1.20, not from 18.1 (Upload wizard broken there). Also upgrading SemanticResultFormats (1.7.1, was not yet available when SMW 1.7.1 was recently installed:) svn switch http://svn.wikimedia.org/svnroot/mediawiki/tags/extensions/SemanticResultFormats/REL_1_7_1 SemanticResultFormats -- Gregor Hagedorn 09:09, 15 March 2012 (CET)

2012-03-21

Replacing our locally modified (NonSvn) Version of Extension Loops with the official /mediawiki/ext-trunk/Loops version, the symlink was changed accordingly. Loops by default is limited to 100 loops, LocalSettings.php therefore changed to "ExtLoops::$maxLoops = 500;" -- transferred here from email by B. Zelazny.

2012-03-30

SVG-Handling: changed $wgSVGConverter from 'rsvg' to 'ImageMagick'. Note that it uses also rsvg-convert, but does not fail to process File:Location Singapore ASEAN.svg. Additionally $wgMaxShellMemory needed to be increased (2×default). Installed strace for debugging of commands. Andreas Plank 09:49, 30 March 2012 (CEST)